X2Go Bug report logs - #1496
PyMOL crashes x2goagent

version graph

Package: x2goagent; Maintainer for x2goagent is X2Go Developers <x2go-dev@lists.x2go.org>; Source for x2goagent is src:nx-libs.

Reported by: Craig Morton <craig.morton@unimelb.edu.au>

Date: Mon, 14 Sep 2020 02:55:02 UTC

Severity: normal

Found in version

Full log

Message #10 received at 1496@bugs.x2go.org (full text, mbox, reply):

Received: (at 1496) by bugs.x2go.org; 7 Oct 2020 13:32:28 +0000
From ulrich.sibiller@gmail.com  Wed Oct  7 15:32:20 2020
X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on
X-Spam-Status: No, score=-1.9 required=3.0 tests=BAYES_00,FREEMAIL_FROM,
	autolearn_force=no version=3.4.2
Received: from mail-yb1-f194.google.com (mail-yb1-f194.google.com [])
	by ymir.das-netzwerkteam.de (Postfix) with ESMTPS id C3E3F5DAFA;
	Wed,  7 Oct 2020 15:32:19 +0200 (CEST)
Received: by mail-yb1-f194.google.com with SMTP id a2so1860899ybj.2;
        Wed, 07 Oct 2020 06:32:19 -0700 (PDT)
X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
        d=1e100.net; s=20161025;
X-Gm-Message-State: AOAM530xoGwpTgzqsVBQq8EyNKB+sXqxgUqyK/vCxzM8GqICVg6c4uua
X-Google-Smtp-Source: ABdhPJw27yDxuHrDTGNQhxQHUEB/MoRAc3Y+C7Tupqt38Z94Bt1W7+GpqJZnbBU3nCxbC0PSxTa5iwJudCIm8Y/JUsw=
X-Received: by 2002:a25:bc09:: with SMTP id i9mr2501650ybh.237.1602077508640;
 Wed, 07 Oct 2020 06:31:48 -0700 (PDT)
MIME-Version: 1.0
References: <ME2PR01MB5124E9AE48D012398C57EA01BB230@ME2PR01MB5124.ausprd01.prod.outlook.com>
In-Reply-To: <ME2PR01MB5124E9AE48D012398C57EA01BB230@ME2PR01MB5124.ausprd01.prod.outlook.com>
From: Ulrich Sibiller <uli42@gmx.de>
Date: Wed, 7 Oct 2020 15:31:22 +0200
Message-ID: <CANVnVYKh0L5ZoxTKKkdP2TUsWtO817EjO+YSZP0c4pHHKfZMAQ@mail.gmail.com>
Subject: Re: [X2Go-Dev] Bug#1496: PyMOL crashes x2goagent
To: Craig Morton <craig.morton@unimelb.edu.au>, 1496@bugs.x2go.org
Cc: "submit@bugs.x2go.org" <submit@bugs.x2go.org>
Content-Type: text/plain; charset="UTF-8"
Please check if it runs with the workaround described here:


On Wed, Oct 7, 2020 at 1:37 PM Craig Morton <craig.morton@unimelb.edu.au> wrote:
> Package: x2goagent
> Version:
> Starting the PyMOL molecular modelling program (www.pymol.org) opens the PyMOL window then immediately crashes the x2go session. The session can't be restarted.
> Dumped core on crash is from x2goagent and has the following information:
> Using host libthread_db library "/lib64/libthread_db.so.1".
> Core was generated by `x2goagent -nolisten tcp -nolisten tcp -dpi 96 -D -auth /home/craig/.'.
> Program terminated with signal 11, Segmentation fault.
> #0  0x000055fb9673da3d in _mesa_update_framebuffer_visual ()
> PyMOL runs just fine sitting at the computer, the crash only occurs with x2go. Tried under KDE and MATE in case it was a KDE issue, same result, same error.
> Running on Centos7, kernel 3.10.0-1127.18.2.el7.x86_64
> Craig.
> _______________________________________________
> x2go-dev mailing list
> x2go-dev@lists.x2go.org
> https://lists.x2go.org/listinfo/x2go-dev

Send a report that this bug log contains spam.

X2Go Developers <owner@bugs.x2go.org>. Last modified: Fri Dec 8 08:34:26 2023; Machine Name: ymir.das-netzwerkteam.de

X2Go Bug tracking system

Debbugs is free software and licensed under the terms of the GNU Public License version 2. The current version can be obtained from https://bugs.debian.org/debbugs-source/.

Copyright © 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson, 2005-2017 Don Armstrong, and many other contributors.