X2Go Bug report logs - #1496
PyMOL crashes x2goagent

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Package: x2goagent; Maintainer for x2goagent is X2Go Developers <x2go-dev@lists.x2go.org>; Source for x2goagent is src:nx-libs.

Reported by: Craig Morton <craig.morton@unimelb.edu.au>

Date: Mon, 14 Sep 2020 02:55:02 UTC

Severity: normal

Found in version 3.5.99.24

Full log

Message #10 received at 1496@bugs.x2go.org (full text, mbox, reply):

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From: Ulrich Sibiller <uli42@gmx.de>
Date: Wed, 7 Oct 2020 15:31:22 +0200
Message-ID: <CANVnVYKh0L5ZoxTKKkdP2TUsWtO817EjO+YSZP0c4pHHKfZMAQ@mail.gmail.com>
Subject: Re: [X2Go-Dev] Bug#1496: PyMOL crashes x2goagent
To: Craig Morton <craig.morton@unimelb.edu.au>, 1496@bugs.x2go.org
Cc: "submit@bugs.x2go.org" <submit@bugs.x2go.org>
Content-Type: text/plain; charset="UTF-8"

Please check if it runs with the workaround described here:
https://wiki.x2go.org/doku.php/wiki:development:glx-xlib-workaround

Uli

On Wed, Oct 7, 2020 at 1:37 PM Craig Morton <craig.morton@unimelb.edu.au> wrote:
>
> Package: x2goagent
> Version: 3.5.99.24
>
> Starting the PyMOL molecular modelling program (www.pymol.org) opens the PyMOL window then immediately crashes the x2go session. The session can't be restarted.
>
> Dumped core on crash is from x2goagent and has the following information:
>
> Using host libthread_db library "/lib64/libthread_db.so.1".
> Core was generated by `x2goagent -nolisten tcp -nolisten tcp -dpi 96 -D -auth /home/craig/.'.
> Program terminated with signal 11, Segmentation fault.
> #0  0x000055fb9673da3d in _mesa_update_framebuffer_visual ()
>
> PyMOL runs just fine sitting at the computer, the crash only occurs with x2go. Tried under KDE and MATE in case it was a KDE issue, same result, same error.
>
> Running on Centos7, kernel 3.10.0-1127.18.2.el7.x86_64
>
> Craig.
> _______________________________________________
> x2go-dev mailing list
> x2go-dev@lists.x2go.org
> https://lists.x2go.org/listinfo/x2go-dev

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