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From: Craig Morton <craig.morton@unimelb.edu.au>
To: "submit@bugs.x2go.org" <submit@bugs.x2go.org>
Subject: PyMOL crashes x2goagent
Thread-Topic: PyMOL crashes x2goagent
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Date: Mon, 14 Sep 2020 02:48:57 +0000
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--_000_ME2PR01MB5124E9AE48D012398C57EA01BB230ME2PR01MB5124ausp_
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Content-Transfer-Encoding: quoted-printable

Package: x2goagent
Version: 3.5.99.24

Starting the PyMOL molecular modelling program (www.pymol.org) opens the Py=
MOL window then immediately crashes the x2go session. The session can't be =
restarted.

Dumped core on crash is from x2goagent and has the following information:

Using host libthread_db library "/lib64/libthread_db.so.1".
Core was generated by `x2goagent -nolisten tcp -nolisten tcp -dpi 96 -D -au=
th /home/craig/.'.
Program terminated with signal 11, Segmentation fault.
#0  0x000055fb9673da3d in _mesa_update_framebuffer_visual ()

PyMOL runs just fine sitting at the computer, the crash only occurs with x2=
go. Tried under KDE and MATE in case it was a KDE issue, same result, same =
error.

Running on Centos7, kernel 3.10.0-1127.18.2.el7.x86_64

Craig.

--_000_ME2PR01MB5124E9AE48D012398C57EA01BB230ME2PR01MB5124ausp_
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<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-=
1">
<style type=3D"text/css" style=3D"display:none;"> P {margin-top:0;margin-bo=
ttom:0;} </style>
</head>
<body dir=3D"ltr">
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Package: x2goagent</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Version:&nbsp;3.5.99.24</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Starting the PyMOL molecular modelling program (www.pymol.org) opens the Py=
MOL window then immediately crashes the x2go session. The session can't be =
restarted.</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Dumped core on crash is from x2goagent and has the following information:</=
div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<span style=3D"font-family: &quot;Courier New&quot;, monospace;">Using host=
 libthread_db library &quot;/lib64/libthread_db.so.1&quot;.</span>
<div><span style=3D"font-family: &quot;Courier New&quot;, monospace;">Core =
was generated by `x2goagent -nolisten tcp -nolisten tcp -dpi 96 -D -auth /h=
ome/craig/.'.</span></div>
<div><span style=3D"font-family: &quot;Courier New&quot;, monospace;">Progr=
am terminated with signal 11, Segmentation fault.</span></div>
<div><span style=3D"font-family: &quot;Courier New&quot;, monospace;">#0 &n=
bsp;0x000055fb9673da3d in _mesa_update_framebuffer_visual ()</span></div>
<br>
PyMOL runs just fine sitting at the computer, the crash only occurs with x2=
go. Tried under KDE and MATE in case it was a KDE issue, same result, same =
error.</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Running on Centos7, kernel&nbsp;3.10.0-1127.18.2.el7.x86_64</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0);">
Craig.</div>
</body>
</html>

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